PGFinder
v1.2.1

Getting Started

  • Introduction
    • Background
    • Methods
    • References
  • Installing PGFinder
    • Online Notebooks
    • Virtual Environment
    • PyPI
    • Development
  • Usage
    • WebUI
      • Upload a file
      • Choose a Mass Database
        • Using a Custom Database
      • Advanced Options
        • Modifications
        • PPM Tolerance
        • Cleanup Window
        • Consolidation PPM
      • Run Analysis
      • Results
    • Command Line
    • find_pg
  • Data Dictionary
    • Inputs
      • FTRS Files
      • MaxQuant Files
      • Modifications
      • Mass Databases (Lists)
      • Reference Masses
      • Target Structures
    • Outputs
      • Embedded Metadata
      • PGFinder Output
  • Contributing
    • Repository Structure
    • Hacking On The lib Directory
      • Development Installation
      • Testing
      • Linting (Also Used in web)
      • Releasing to PyPI
    • Hacking On the smitheens Package
    • Hacking On The web Directory
      • Development Installation
      • Testing
      • Formatting
      • Linting
  • Smithereens
    • Integration with PGFinder
      • Pre-requisites
      • Building the Package
      • Build the Package for Web Assembly
      • Copying to PGFinder
      • Adding the Uploader - Svelte
  • Copying

API

  • API Reference
    • pgfinder
      • Subpackages
        • pgfinder.gui
        • pgfinder.logs
      • Submodules
        • pgfinder.errors
        • pgfinder.find_pg
        • pgfinder.matching
        • pgfinder.pgio
        • pgfinder.utils
        • pgfinder.validation
      • Attributes
      • Functions
      • Package Contents
        • dict_to_decimal()
        • PARAMETERS_FILE
        • PARAMETERS
        • PARAMETERS
        • PARAMETERS
        • COLUMNS_FILE
        • COLUMNS
        • COLUMNS
        • MULTIMERS
        • MOD_TYPE
        • MASS_TO_CLEAN
        • release
        • __version__
PGFinder
  • Python Module Index

Python Module Index

p
 
p
- pgfinder
    pgfinder.errors
    pgfinder.find_pg
    pgfinder.gui
    pgfinder.gui.internal
    pgfinder.gui.shim
    pgfinder.logs
    pgfinder.logs.logs
    pgfinder.matching
    pgfinder.pgio
    pgfinder.utils
    pgfinder.validation

© Copyright 2022, PGFinder authors. Revision cff360ae.

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