PGFinder

Getting Started

  • Introduction
    • Background
    • Methods
    • References
  • Installing PGFinder
    • Online Notebooks
    • Virtual Environment
    • PyPI
    • Development
  • Usage
    • WebUI
      • Mass Calculator Module
        • Bulk Calculation
        • Single Calculation
      • MS1 Search Module
        • Upload a file
        • Choose a Mass Database
        • Advanced Options
        • Run Analysis
        • Results
      • Fragment Generator Module
        • Single Calculation
        • Bulk Calculation
    • Command Line
    • find_pg
  • PGLang
    • Syntax
    • Residues
    • Modifications
  • Data Dictionary
    • Inputs
      • FTRS Files
      • MaxQuant Files
      • Modifications
      • Mass Databases (Lists)
      • Reference Masses
      • Target Structures
    • Outputs
      • Embedded Metadata
      • PGFinder Output
  • Contributing
    • Repository Structure
    • Hacking On The lib Directory
      • Development Installation
      • Testing
      • Linting (Also Used in web)
      • Releasing to PyPI
    • Hacking On the smitheens Package
    • Hacking On The web Directory
      • Development Installation
      • Testing
      • Formatting
      • Linting
  • Smithereens
    • Integration with PGFinder
      • Pre-requisites
      • Building the Package
      • Build the Package for Web Assembly
      • Copying to PGFinder
  • Copying

API

  • API Reference
    • pgfinder
      • Submodules
        • pgfinder.errors
        • pgfinder.find_pg
        • pgfinder.gui
        • pgfinder.logs
        • pgfinder.matching
        • pgfinder.pgio
        • pgfinder.utils
        • pgfinder.validation
      • Attributes
      • Functions
      • Package Contents
        • dict_to_decimal()
        • PARAMETERS_FILE
        • PARAMETERS
        • PARAMETERS
        • PARAMETERS
        • COLUMNS_FILE
        • COLUMNS
        • COLUMNS
        • MULTIMERS
        • MOD_TYPE
        • MASS_TO_CLEAN
        • release
        • __version__
PGFinder
  • Welcome to pgfinder’s documentation!
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Welcome to pgfinder’s documentation!

Getting Started

  • Introduction
  • Installing PGFinder
  • Usage
  • PGLang
  • Data Dictionary
  • Contributing
  • Smithereens
  • Copying

API

  • API Reference
    • pgfinder

Indices and tables

  • Index

  • Module Index

  • Search Page

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